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Number of items: 34.

Article in a Scientific Journal - peer-reviewed


Yu, L., Boström, C., Franzenburg, S., Bayer, T., Dagan, T. and Reusch, T. B. H. (2020) Somatic genetic drift and multilevel selection in a clonal seagrass Nature Ecology & Evolution, 4 . pp. 952-962. DOI 10.1038/s41559-020-1196-4.


Wein, T., Romero Picazo, D., Blow, F., Woehle, C., Jami, E., Reusch, T. B. H., Martin, W. F. and Dagan, T. (2019) Currency, Exchange, and Inheritance in the Evolution of Symbiosis Trends in Microbiology, 27 (10). pp. 836-849. DOI 10.1016/j.tim.2019.05.010.

Rausch, P., Rühlemann, M., Hermes, B. M., Doms, S., Dagan, T., Dierking, K., Domin, H., Fraune, S., von Frieling, J., Hentschel, U., Heinsen, F. A., Höppner, M., Jahn, M. T., Jaspers, C., Kissoyan, K. A. B., Langfeldt, D., Rehman, A., Reusch, T. B. H., Roeder, T., Schmitz, R. A., Schulenburg, H., Soluch, R., Sommer, F., Stukenbrock, E., Weiland-Bräuer, N., Rosenstiel, P., Franke, A., Bosch, T. and Baines, J. F. (2019) Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms Microbiome, 7 (1). Art.Nr. 133. DOI 10.1186/s40168-019-0743-1.


Glock, N., Roy, A. S., Romero, D., Wein, T., Weissenbach, J., Revsbech, N. P., Høgslund, S., Clemens, D., Sommer, S. and Dagan, T. (2019) Metabolic preference of nitrate over oxygen as an electron acceptor in foraminifera from the Peruvian oxygen minimum zone PNAS Proceedings of the National Academy of Sciences of the United States of America, 116 (8). pp. 2860-2865. DOI 10.1073/pnas.1813887116.

Wein, T., Hülter, N. F., Mizrahi, I. and Dagan, T. (2019) Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance Nature Communications, 10 (1). DOI 10.1038/s41467-019-10600-7.

Hurst, L. D., Kaminski Strauss, S., Schirman, D., Jona, G., Brooks, A. N., Kunjapur, A. M., Nguyen Ba, A. N., Flint, A., Solt, A., Mershin, A., Dixit, A., Yona, A. H., Csörgő, B., Busby, B. P., Hennig, B. P., Pál, C., Schraivogel, D., Schultz, D., Wernick, D. G., Agashe, D., Levi, D., Zabezhinsky, D., Russ, D., Sass, E., Tamar, E., Herz, E., Levy, E. D., Church, G. M., Yelin, I., Nachman, I., Gerst, J. E., Georgeson, J. M., Adamala, K. P., Steinmetz, L. M., Rübsam, M., Ralser, M., Klutstein, M., Desai, M. M., Walunjkar, N., Yin, N., Aharon Hefetz, N., Jakimo, N., Snitser, O., Adini, O., Kumar, P., Soo Hoo Smith, R., Zeidan, R., Hazan, R., Rak, R., Kishony, R., Johnson, S., Nouriel, S., Vonesch, S. C., Foster, S., Dagan, T., Wein, T., Karydis, T., Wannier, T. M., Stiles, T., Olin-Sandoval, V., Mueller, W. F., Bar-On, Y. M., Dahan, O. and Pilpel, Y. (2019) Evolthon: A community endeavor to evolve lab evolution PLOS Biology, 17 (3). e3000182. DOI 10.1371/journal.pbio.3000182.

Hassani, M. A., Özkurt, E., Seybold, H., Dagan, T. and Stukenbrock, E. H. (2019) Interactions and Coadaptation in Plant Metaorganisms Annual Review of Phytopathology, 57 (1). DOI 10.1146/annurev-phyto-082718-100008.


Woehle, C., Roy, A. S., Glock, N., Wein, T., Weissenbach, J., Rosenstiel, P., Hiebenthal, C., Michels, J., Schönfeld, J. and Dagan, T. (2018) A Novel Eukaryotic Denitrification Pathway in Foraminifera Current Biology, 28 (16). 2536-2543.e5. DOI 10.1016/j.cub.2018.06.027.


Bang, C., Dagan, T., Deines, P., Dubilier, N., Duschl, W. J., Fraune, S., Hentschel, U., Hirt, H., Hülter, N., Lachnit, T., Picazo, D., Pita, L., Pogoreutz, C., Rädecker, N., Saad, M. M., Schmitz, R. A., Schulenburg, H., Voolstra, C. R., Weiland-Bräuer, N., Ziegler, M. and Bosch, T. C. G. (2018) Metaorganisms in extreme environments: do microbes play a role in organismal adaptation? Zoology, 127 . pp. 1-19. DOI 10.1016/j.zool.2018.02.004.

Wein, T., Dagan, T., Fraune, S., Bosch, T. C. G., Reusch, T. B. H. and Hülter, N. F. (2018) Carrying Capacity and Colonization Dynamics of Curvibacter in the Hydra Host Habitat Frontiers in Microbiology, 9 . Art.Nr. 443. DOI 10.3389/fmicb.2018.00443.

Svetlitsky, D., Dagan, T., Chalifa-Caspi, V., Ziv-Ukelson, M. and Valencia, A. (2018) CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes Bioinformatics, 265 . DOI 10.1093/bioinformatics/bty861 .

Kupczok, A., Neve, H., Huang, K. D., Hoeppner, M. P., Heller, K. J., Franz, C. M. A. P., Dagan, T. and Perna, N. (2018) Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades Molecular Biology and Evolution, 35 (5). pp. 1147-1159. DOI 10.1093/molbev/msy027.

Godfroid, M., Dagan, T., Kupczok, A. and Hershberg, R. (2018) Recombination Signal in Mycobacterium tuberculosis Stems from Reference-guided Assemblies and Alignment Artefacts Genome Biology and Evolution, 10 (8). pp. 1920-1926. DOI 10.1093/gbe/evy143.

Ilhan, J., Kupczok, A., Woehle, C., Wein, T., Hülter, N. F., Rosenstiel, P., Landan, G., Mizrahi, I., Dagan, T. and Falush, D. (2018) Segregational Drift and the Interplay between Plasmid Copy Number and Evolvability Molecular Biology and Evolution, 36 . DOI 10.1093/molbev/msy225.

Weissenbach, J., Ilhan, J., Bogumil, D., Hülter, N., Stucken, K. and Dagan, T. (2017) Evolution of Chaperonin Gene Duplication in Stigonematalean Cyanobacteria (Subsection V) Genome Biology and Evolution, 9 . evw287. DOI 10.1093/gbe/evw287.

Wöhle, C., Dagan, T., Landan, G., Vardi, A. and Rosenwasser, S. (2017) Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis Nature Plants, 3 (6). p. 17066. DOI 10.1038/nplants.2017.66.

Tria, F. D. K., Landan, G. and Dagan, T. (2017) Phylogenetic rooting using minimal ancestor deviation Nature Ecology & Evolution, 1 . DOI 10.1038/s41559-017-0193.

Popa, O., Landan, G. and Dagan, T. (2017) Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction The ISME Journal, 11 (2). pp. 543-554. DOI 10.1038/ismej.2016.116.

Koch, R., Kupczok, A., Stucken, K., Ilhan, J., Hammerschmidt, K. and Dagan, T. (2017) Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria BMC Evolutionary Biology, 17 (1). DOI 10.1186/s12862-017-1053-5.

Hülter, N., Ilhan, J., Wein, T., Kadibalban, A. S., Hammerschmidt, K. and Dagan, T. (2017) An evolutionary perspective on plasmid lifestyle modes Current Opinion in Microbiology, 38 . pp. 74-80. DOI 10.1016/j.mib.2017.05.001.

Kadibalban, A. S., Bogumil, D., Landan, G. and Dagan, T. (2016) DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes Genome Biology and Evolution, 8 (5). pp. 1590-1599. DOI .

Kupczok, A., Landan, G. and Dagan, T. (2015) The Contribution of Genetic Recombination to CRISPR Array Evolution Genome Biology and Evolution, 7 (7). pp. 1925-1939. DOI 10.1093/gbe/evv113.

Thiergart, T., Schmitz, U., Landan, G., Martin, W. F. and Dagan, T. (2014) Application and comparative performance of network modularity algorithms to ecological communities classification Acta Societatis Botanicorum Poloniae, 83 (2). pp. 93-102. DOI 10.5586/asbp.2014.016.

Bogumil, D., Alvarez-Ponce, D., Landan, G., McInerney, J. O. and Dagan, T. (2014) Integration of Two Ancestral Chaperone Systems into One: The Evolution of Eukaryotic Molecular Chaperones in Light of Eukaryogenesis Molecular Biology and Evolution, 31 (2). pp. 410-418. DOI 10.1093/molbev/mst212.

Dagan, T., Bapteste, E., McInerney, J. O. and Martin, W. F. (2014) SMBE Satellite Meeting on Reticulated Microbial Evolution 2014-Meeting Report Genome Biology and Evolution, 6 (9). pp. 2206-2209. DOI 10.1093/gbe/evu173.

Dagan, T., Roettger, M., Stucken, K., Landan, G., Koch, R., Major, P., Gould, S. B., Goremykin, V. V., Rippka, R., Tandeau de Marsac, N., Gugger, M., Lockhart, P. J., Allen, J. F., Brune, I., Maus, I., Puhler, A. and Martin, W. F. (2013) Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids Genome Biology and Evolution, 5 (1). pp. 31-44. DOI 10.1093/gbe/evs117.

Nelson-Sathi, S., Dagan, T., Landan, G., Janssen, A., Steel, M., McInerney, J. O., Deppenmeier, U. and Martin, W. F. (2012) Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea Proceedings of the National Academy of Sciences, 109 (50). pp. 20537-20542. DOI 10.1073/pnas.1209119109.

Bogumil, D., Landan, G., Ilhan, J. and Dagan, T. (2012) Chaperones Divide Yeast Proteins into Classes of Expression Level and Evolutionary Rate Genome Biology and Evolution, 4 (5). pp. 618-625. DOI 10.1093/gbe/evs025.

Bogumil, D. and Dagan, T. (2012) Cumulative Impact of Chaperone-Mediated Folding on Genome Evolution Biochemistry, 51 (50). pp. 9941-9953. DOI 10.1021/bi3013643.

Popa, O., Hazkani-Covo, E., Landan, G., Martin, W. and Dagan, T. (2011) Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes Genome Research, 21 (4). pp. 599-609. DOI 10.1101/gr.115592.110.

Dagan, T. (2011) Phylogenomic networks Trends in Microbiology, 19 (10). pp. 483-491. DOI 10.1016/j.tim.2011.07.001.

Popa, O. and Dagan, T. (2011) Trends and barriers to lateral gene transfer in prokaryotes Current Opinion in Microbiology, 14 (5). pp. 615-623. DOI 10.1016/j.mib.2011.07.027.

Dagan, T., Artzy-Randrup, Y. and Martin, W. (2008) Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution Proceedings of the National Academy of Sciences, 105 (29). pp. 10039-10044. DOI 10.1073/pnas.0800679105.

Dagan, T. and Martin, W. (2007) Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution Proceedings of the National Academy of Sciences, 104 (3). pp. 870-875. DOI 10.1073/pnas.0606318104.

This list was generated on Wed Oct 21 03:32:32 2020 CEST.